Therapeutic targets for HIV-1 infection in the host proteome

doi:10.1186/1742-4690-2-20

Retrovirology

Volume 2

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Liang WS
Maddukuri A
Teslovich TM
de la Fuente C
Agbottah E
Dadgar S
Kehn K
Hautaniemi S
Pumfery A
Stephan DA
Kashanchi F

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Liang WS
Maddukuri A
Teslovich TM
de la Fuente C
Agbottah E
Dadgar S
Kehn K
Hautaniemi S
Pumfery A
Stephan DA
Kashanchi F
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Therapeutic targets for HIV-1 infection in the host proteome

Winnie S Liang²^* , Anil Maddukuri¹^* , Tanya M Teslovich³ , Cynthia de la Fuente¹ , Emmanuel Agbottah¹ , Shabnam Dadgar¹ , Kylene Kehn¹ , Sampsa Hautaniemi⁴ , Anne Pumfery¹ , Dietrich A Stephan² and Fatah Kashanchi¹^,5

¹Department of Biochemistry and Molecular Biology, George Washington University School of Medicine, Washington, DC 20037, USA

²Neurogenomics Division, Translational Genomics Research Institute, Phoenix, AZ 85004, USA

³Institute for Genetic Medicine, Johns Hopkins Medical School, Baltimore, MD 21205, USA

⁴Institute of Signal Processing, Tampere University of Technology, PO Box 553, 33101, Tampere, Finland

⁵The Institute for Genomic Research, TIGR, Rockville, MD 20850, USA

author email corresponding author email* Contributed equally

Retrovirology 2005, 2:20doi:10.1186/1742-4690-2-20


Published:	21 March 2005

Additional files

Additional File 5:

Self-organizing map (SOM) for filter 1 (refer to Methods)

Format: JPEG Size: 42KB Download file

Additional File 6:

Self-organizing map (SOM) for filter 2 (refer to Methods)

Format: JPEG Size: 42KB Download file

Additional File 7:

K-means clustering (15 graphs and corresponding close-ups shown)

Format: PPT Size: 183KB Download file

This file can be viewed with: Microsoft PowerPoint Viewer

Additional File 4:

Gene lists filtered for all absent in pCep4 samples and at least 2 present calls in eTat samples (Excel worksheet, "2P"), 4 present calls in eTat samples (Excel worksheet, "4P"), and 8 present calls in eTat samples (Excel spreadsheet, "8P")

Format: XLS Size: 67KB Download file

This file can be viewed with: Microsoft Excel Viewer

Additional File 1:

GEO accession numbers for each sample

Format: XLS Size: 21KB Download file

This file can be viewed with: Microsoft Excel Viewer

Additional File 3:

K-means clustering gene lists (three Excel worksheets, "set1–5," "set6–10," "set11–15")

Format: XLS Size: 2.1MB Download file

This file can be viewed with: Microsoft Excel Viewer

Additional File 2:

Self-organizing map (SOM) gene lists for the first and third filters (two Excel worksheets, "HIV_SOM_Filt_1a" & "HIV_SOM_Filt_3a")

Format: XLS Size: 260KB Download file

This file can be viewed with: Microsoft Excel Viewer