Table 4 |
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|
dN/dS values in HIV-1 RT sequences within mother sets and within infant sets. |
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|
MOTHER |
INFANT |
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|
|
|||||||||||
|
N |
P1 |
P2 |
P3 |
dN/dS |
N |
P1 |
P2 |
P3 |
dN/dS |
||
|
|
|||||||||||
|
Mother B |
12 |
53 |
18.8 |
27 |
8.9 |
Infant B |
12 |
41 |
42 |
16 |
3.31 |
|
Mother C |
12 |
55.5 |
43 |
1.3 |
6.09 |
Infant C |
13 |
0 |
81.2 |
18.8 |
0.01 |
|
Mother D |
11 |
70.6 |
5.7 |
23.6 |
2.52 |
Infant D |
10 |
74.8 |
19.2 |
5.9 |
4.44 |
|
Mother F |
14 |
81.7 |
7.8 |
10.4 |
2.67 |
Infant F |
12 |
0 |
100 |
0 |
0.001 |
|
Mother H |
14 |
72 |
0 |
27 |
2.34 |
Infant H1 |
11 |
47 |
50 |
2.8 |
14.04 |
|
Infant H2 |
11 |
56 |
42 |
0.6 |
16.58 |
||||||
|
Totals |
66.5 |
15.1 |
18.4 |
4.50 |
69 |
36.5 |
55.7 |
7.8 |
6.39 |
||
|
|
|||||||||||
|
N – number of RT clones sequenced.; P1 = proportion of conserved codons as a percent; P2 = proportion of neutral codons as a percent; P3 = proportion of positively selected codons as a percent. dN/dS = ratio of synonymous to non-synonymous at P3 sites. Totals were calculates as an average of all values. |
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|
Sundaravaradan et al. Retrovirology 2005 2:36 doi:10.1186/1742-4690-2-36 |
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