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Resolution: standard / high Figure 6.
Effect of Tax on cellular promoters and its protein-protein interaction.A) Chromatin immunoprecipitation experiments were used to test whether Tax could occupy
Sgt1 or p97 promoters. CTLL/WT and CTLL/703 (7.5 × 106 cells/ChIP), as well as C81 (Tax expressing, 5.5 × 106 cells/ChIP) and CEM (negative control with no Tax expression, 5.5 × 106 cells/ChIP) were cross-linked, and processed for ChIP assay. Lanes 1, 4, 7 and 10
are "input" lanes where no immunoprecipitation was performed prior to PCR (positive
control). Lanes 3, 6, 9 and 12 contained no antibody, and only beads, for the immunoprecipitation
(negative control). Lanes 2, 5, 8 and 11 used a mixture of 500 ng of each TAb anti-Tax
monoclonal antibodies (169, 170, 171 and 172; amount of each antibody judged by running
100 ng of each purified antibody on 4–20% SDS-PAGE and stained for Heavy and light
chains) as the experimental sample. The high salt wash step after immunoprecipitation
contained 1000 mM (as opposed to 500 mM) salt. B) Two set of C81 cells were used for immunoprecipitation followed by western blot
against Tax. First, unsynchronized C81 cells (2 mg total cellular extract, Lanes 1–6)
where majority of cells were at the G1 phase (71%), were used for immunoprecipitation
with anti-Sgt1 (1 μg), anti-p97 (1.2 μg), anti-cdk2 (0.75 μg) and IgG (1.2 μg) followed
by western blot with anti-Tax polyclonal antibody. We have previously used this method
to define a list of Tax binding proteins using low and high salt wash conditions [69].
We also enriched C81 cells for G2/M population (67%) by treating with low serum (1%)
and nocodazole (Noco, 50 ng/ml) for 72 hrs prior to the immunoprecipitation [15].
Lanes 4, 5, 10 and 11 served as negative control for IP, and lanes 3 and 9 served
as positive control for Tax binding protein under high salt conditions (cdk2). Lanes
6 and 12 were total cellular extract (Input, 50 μg) and lanes 1, 2, 7 and 8 served
as the experimental sample. The high salt wash after immunoprecipitation contained
1000 mM salt.
de la Fuente et al. Retrovirology 2006 3:43 doi:10.1186/1742-4690-3-43 |