Table 1

Integration sites of tumors assayed for Pvt1 exon 1 transcript, and for Pvt1-encoded miRNA expression

#
Tumor
Location
Orientation

1
593S
chr15:61860693
T+G+
2
1919S
chr15:61866476
T+G+
3
194S
chr15:61866608
T+G+
4
1139S
chr15:61866868
T+G+
5
1963S
chr15:61867056
T+G+
6
3404S
chr15:61867131
T+G+
7
1744S
chr15:61867205
T+G+
8
244S
chr15:61867333
T+G+
9
560S
chr15:61867464
T+G+
10
1052S
chr15:61867915
G+T+
11
672S
chr15:61868051
G+T+
12
1813S
chr15:61868173
G+T+
13
955S
chr15:61868438
G+T-
14
763S
chr15:61868296
G+T+
15
1754S
chr15:61868379
G+T+
16
1182S
chr15:61868500
G+T+
17
1572S
chr15:61868585
G+T+
18
1890S
chr15:61868694
G+T+
19
1888S
chr15:61869059
G+T-
20
1190S
chr15:61868969
G+T+
21
504S
chr15:61869211
G+T+
22
2105S
chr15:61869357
G+T+
23
1910S
chr15:61870240
G+T+
24
549S
chr15:61874317
G+T+
25
3005S
chr15:61884560
G+T+
26
1437S
chr15:61893983
G+T+
27
455S
chr15:61909406
G+T+
28
2262S
chr15:61922370
G+T+
31
2062T
chr15:61988152
G+T+
32
1784S
chr15:61995200
G+T+
33
1551S
chr15:61996855
G+T+
34
3269T
chr15:61997744
G+T+
35
1309S
chr15:61998706
G+T+
36
1719S
chr15:62041370
G+T-
37
652T
chr15:62041573
G+T+
38
3155S
chr15:62042340
G+T+
39
133S
chr15:62043246
G+T+
40
1820S
chr15:62062642
G+T+
41
1187S
chr15:62285362
G+T+
42
1938T
chr15:62286594
G+T+
43
674S
chr15:62287322
G+T+
44
1907S
chr15:62288987
G+T+
45
1717T
chr15:62290852
G+T+
46
1959S
chr15:62524605
G+T+
C2
1855S
no Pvt1 integration site

C3
3252T
no Pvt1 integration site

C4
3413T
no Pvt1 integration site

C5
3421S
no Pvt1 integration site

C6
1463S
no Pvt1 integration site

C7
1967S
no Pvt1 integration site

C8
14845S
no Pvt1 integration site

C9
1278S
no Pvt1 integration site

C10
1065S
no Pvt1 integration site

Transcript:
AK030859
chr15:61867667–61870735
G+

Sites as defined by mm8 version of genome. Orientation, either "+" or "-", of the proviral insert (tag, denoted as T) relative to the direction of the genome display, and to the Pvt1 transcript ("gene", denoted as G, here always G+).

Beck-Engeser et al. Retrovirology 2008 5:4   doi:10.1186/1742-4690-5-4

Open Data