Table 1 |
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Integration sites of tumors assayed for Pvt1 exon 1 transcript, and for Pvt1-encoded miRNA expression |
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| # |
Tumor |
Location |
Orientation |
|
|
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| 1 |
593S |
chr15:61860693 |
T+G+ |
| 2 |
1919S |
chr15:61866476 |
T+G+ |
| 3 |
194S |
chr15:61866608 |
T+G+ |
| 4 |
1139S |
chr15:61866868 |
T+G+ |
| 5 |
1963S |
chr15:61867056 |
T+G+ |
| 6 |
3404S |
chr15:61867131 |
T+G+ |
| 7 |
1744S |
chr15:61867205 |
T+G+ |
| 8 |
244S |
chr15:61867333 |
T+G+ |
| 9 |
560S |
chr15:61867464 |
T+G+ |
| 10 |
1052S |
chr15:61867915 |
G+T+ |
| 11 |
672S |
chr15:61868051 |
G+T+ |
| 12 |
1813S |
chr15:61868173 |
G+T+ |
| 13 |
955S |
chr15:61868438 |
G+T- |
| 14 |
763S |
chr15:61868296 |
G+T+ |
| 15 |
1754S |
chr15:61868379 |
G+T+ |
| 16 |
1182S |
chr15:61868500 |
G+T+ |
| 17 |
1572S |
chr15:61868585 |
G+T+ |
| 18 |
1890S |
chr15:61868694 |
G+T+ |
| 19 |
1888S |
chr15:61869059 |
G+T- |
| 20 |
1190S |
chr15:61868969 |
G+T+ |
| 21 |
504S |
chr15:61869211 |
G+T+ |
| 22 |
2105S |
chr15:61869357 |
G+T+ |
| 23 |
1910S |
chr15:61870240 |
G+T+ |
| 24 |
549S |
chr15:61874317 |
G+T+ |
| 25 |
3005S |
chr15:61884560 |
G+T+ |
| 26 |
1437S |
chr15:61893983 |
G+T+ |
| 27 |
455S |
chr15:61909406 |
G+T+ |
| 28 |
2262S |
chr15:61922370 |
G+T+ |
| 31 |
2062T |
chr15:61988152 |
G+T+ |
| 32 |
1784S |
chr15:61995200 |
G+T+ |
| 33 |
1551S |
chr15:61996855 |
G+T+ |
| 34 |
3269T |
chr15:61997744 |
G+T+ |
| 35 |
1309S |
chr15:61998706 |
G+T+ |
| 36 |
1719S |
chr15:62041370 |
G+T- |
| 37 |
652T |
chr15:62041573 |
G+T+ |
| 38 |
3155S |
chr15:62042340 |
G+T+ |
| 39 |
133S |
chr15:62043246 |
G+T+ |
| 40 |
1820S |
chr15:62062642 |
G+T+ |
| 41 |
1187S |
chr15:62285362 |
G+T+ |
| 42 |
1938T |
chr15:62286594 |
G+T+ |
| 43 |
674S |
chr15:62287322 |
G+T+ |
| 44 |
1907S |
chr15:62288987 |
G+T+ |
| 45 |
1717T |
chr15:62290852 |
G+T+ |
| 46 |
1959S |
chr15:62524605 |
G+T+ |
| C2 |
1855S |
no Pvt1 integration site |
|
| C3 |
3252T |
no Pvt1 integration site |
|
| C4 |
3413T |
no Pvt1 integration site |
|
| C5 |
3421S |
no Pvt1 integration site |
|
| C6 |
1463S |
no Pvt1 integration site |
|
| C7 |
1967S |
no Pvt1 integration site |
|
| C8 |
14845S |
no Pvt1 integration site |
|
| C9 |
1278S |
no Pvt1 integration site |
|
| C10 |
1065S |
no Pvt1 integration site |
|
| Transcript: |
AK030859 |
chr15:61867667–61870735 |
G+ |
|
|
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Sites as defined by mm8 version of genome. Orientation, either "+" or "-", of the proviral insert (tag, denoted as T) relative to the direction of the genome display, and to the Pvt1 transcript ("gene", denoted as G, here always G+). |
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|
Beck-Engeser et al. Retrovirology 2008 5:4 doi:10.1186/1742-4690-5-4 |
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