Figure 6.

Dynamics of major subpopulations in macaque M04007. The major subpopulations present at the weeks shown on the x-axis are represented by colored bars. Subpopulations with identical sequences have the same number and color and drug resistant mutations are labeled. The left y-axis shows the percentage of a subpopulation in the total population. The right y-axis shows the viral load (diamond symbols) for the whole population of each week. Treatments are shown with arrows at the top of the figure along with the week post-infection (week 0 denotes the RT-SHIV challenge stock). Horizontal red bars show the percentage of all subpopulations with a single K103N mutation in the population of each week. Identical subpopulation were given the same subpopulation designation and color code.