Table 2 |
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|
Differentially expressed virus-related sequence from cDNA microarray analysis |
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|
Probe ID |
GeneBank ID |
Gene annotation from the best hit/Domain |
Fold difference of array expression (LWS/HWS) |
Nucleotide BLAST |
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|
|
|
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|
0 d male |
0 d female |
56 d male |
56 d female |
EST length |
Hit length (hit/total) |
Similarity (%) |
|||
|
|
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|
RJA064A11.ab1 |
ALV ev-21 and its integration site |
30.8 |
20.6 |
23.8 |
21.5 |
377 |
305/2734 |
97.7 |
|
|
RDA-81 |
NA |
ALV ADOL-7501, proviral sequence |
20.0 |
12.9 |
10.4 |
11.2 |
210 |
207/7612 |
96.2 |
|
RJA002E06 |
ALV strain ev-3/Avian gp85 |
18.4 |
13.6 |
14.6 |
14.4 |
757 |
757/5842 |
99.1 |
|
|
WLA044E07.ab1 |
ALV strain ev-3, complete genome |
8.3 |
5.7 |
6.8 |
6.2 |
588 |
409/5842 |
100 |
|
|
WLA070B07.ab1 |
ALV strain ev-3, complete genome |
6.9 |
4.9 |
7.8 |
6.9 |
368 |
153/5842 |
100 |
|
|
VeFi2.66.C3* |
Myeloblastosis-assoc. virus genes/Avian gp85 |
2.0 |
1.9 |
2.0 |
1.9 |
2567 |
2120/7704 |
92.3 |
|
|
WLA097G09.ab1 |
ALV (strain RAV 7) 3' noncoding region |
2.5 |
2.3 |
-. |
2.1 |
326 |
274/358 |
94.5 |
|
|
WLA043C12.ab1 |
ALV strain ev-3, complete genome |
1.6 |
- |
1.6 |
1.6 |
454 |
451/5842 |
96.3 |
|
|
WLA019C03.ab1 |
ALV strain ev-6 envelope polyprotein |
- |
4.3 |
4.8 |
4.8 |
685 |
151/2720 |
96.7 |
|
|
RDA-69 |
NA |
ALV strain ev-1, complete genome |
- |
- |
- |
2.5 |
185 |
170/7525 |
98.2 |
|
|
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|
The gene annotation and BLAST result was collected from http://www.sbc.su.se/~arve/chicken webcite[23,24]. NA, GeneBank ID is not available. VeFi2.66.C3* had the best hit in Myeloblastosis-associated virus genes, however, BLAST result with protein sequences from SwissProt and TrEMBL showed the best hit on env protein of ALV. |
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|
Ka et al. Retrovirology 2009 6:68 doi:10.1186/1742-4690-6-68 |
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